If you have a linux system with ImageMagick installed this is easy.
While I refer to jpg and eps files in this howto, conversion between any two formats that ImageMagick supports is similar.
Let us say you have a directory full of eps files along with non eps files. A simple shell script using "sed" will do the trick
for i in *.eps
do
prefix=`echo $i | sed 's/\.eps//'`
suffix=".jpg"
newfile=`echo "$prefix$suffix"`
convert -density 300 -units PixelsPerInch $i $newfile
done
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